--- Paste #107 +++ Paste #108 @@ -1,22 +1,331 @@ -import numpy as np -import yt - -from yt.data_objects.particle_filters import \ - particle_filter - -@particle_filter("star", requires=["creation_time"]) -def _dm_filter(pfilter, data): - dt = data.ds.quan(20, "Myr") - return data['creation_time'] >= data.ds.current_time - dt - -def _sfr_density(field, data): - dt = data.ds.quan(20, "Myr") - return data['deposit', 'star_density'] / dt - -if __name__ == "__main__": - ds = yt.load("DD0046/DD0046") - ds.add_particle_filter('star') - ds.add_field(('gas', 'sfr_density'), - function=_sfr_density, - units='Msun/yr/pc**3', - sampling_type='cell') +------------------------------------------------------------------------------------------- +AvailMem: Largest = 187241.73 Mb (on task=572), Smallest = 34509.24 Mb (on task=497), Average = 126305.09 Mb +Total Mem: Largest = 191903.91 Mb (on task=477), Smallest = 128335.64 Mb (on task=349), Average = 141367.14 Mb +Committed_AS: Largest = 157394.67 Mb (on task=497), Smallest = 2483.91 Mb (on task=15), Average = 15062.05 Mb +SwapTotal: Largest = 8192.00 Mb (on task=0), Smallest = 8192.00 Mb (on task=0), Average = 8192.00 Mb +SwapFree: Largest = 8192.00 Mb (on task=115), Smallest = 3541.03 Mb (on task=255), Average = 7991.03 Mb +AllocMem: Largest = 157394.67 Mb (on task=497), Smallest = 2483.91 Mb (on task=15), Average = 15062.05 Mb +------------------------------------------------------------------------------------------- + + +This is GIZMO, version 0.5. + +Running on 600 MPI tasks. + +Code was compiled with settings: + + PERIODIC + KERNEL_FUNCTION=3 + PMGRID=1024 + MULTIPLEDOMAINS=64 + ADAPTIVE_GRAVSOFT_FORALL + NOTYPEPREFIX_FFTW + DOUBLEPRECISION_FFTW + +Size of particle structure 256 [bytes] + +Size of sph particle structure 304 [bytes] +Obtaining parameters from file '/home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param': +InitCondFile /ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024 +OutputDir /ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/output +ICFormat 1 +SnapFormat 3 +RestartFile restart +SnapshotFileBase snapshot +OutputListOn 1 +OutputListFilename /home/desika.narayanan/gizmo_stuff/timings_files/unit_redshifts.txt +NumFilesPerSnapshot 1 +NumFilesWrittenInParallel 1 +TimeOfFirstSnapshot 0.1 +TimeBetSnapshot 1.1 +TimeBetStatistics 0.05 +TimeLimitCPU 342000 +CpuTimeBetRestartFile 14400 +ResubmitOn 0 +ResubmitCommand my-scriptfile +MaxMemSize 3800 +PartAllocFactor 3 +BufferSize 100 +TimeBegin 0.004 +TimeMax 1 +ComovingIntegrationOn 1 +BoxSize 100000 +Omega0 0.3 +OmegaLambda 0.7 +OmegaBaryon 0.048 +HubbleParam 0.68 +MaxSizeTimestep 0.005 +MinSizeTimestep 1e-12 +TreeDomainUpdateFrequency 0.005 +UnitLength_in_cm 3.08568e+21 +UnitMass_in_g 1.989e+43 +UnitVelocity_in_cm_per_s 100000 +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'UnitMagneticField_in_gauss' ignored ! +GravityConstantInternal 0 +InitGasTemp 683 +MinGasTemp 10 +DesNumNgb 64 +MaxHsml 1e+10 +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'MinHsml' ignored ! +MinGasHsmlFractional 0.5 +SofteningGas 0.5 +SofteningHalo 0.5 +SofteningDisk 0.5 +SofteningBulge 0.5 +SofteningStars 0.5 +SofteningBndry 0.5 +SofteningGasMaxPhys 0.5 +SofteningHaloMaxPhys 0.5 +SofteningDiskMaxPhys 0.5 +SofteningBulgeMaxPhys 0.5 +SofteningStarsMaxPhys 0.5 +SofteningBndryMaxPhys 0.5 +AGS_DesNumNgb 64 +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'TurbDiffusionCoefficient' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BiniX' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BiniY' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BiniZ' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'CritPhysDensity' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'SfEffPerFreeFall' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'MaxSfrTimescale' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'TempSupernova' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'TempClouds' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'FactorSN' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'FactorEVP' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'FactorForSofterEQS' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'WindEfficiency' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'WindEnergyFraction' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'WindFreeTravelMaxTime' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'WindFreeTravelDensFac' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'VariableWindVelFactor' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'VariableWindSpecMomentum' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'InitMetallicity' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'InitStellarAge' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'WindMomentumLoading' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'SNeIIEnergyFrac' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'HIIRegion_fLum_Coupled' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'PhotonMomentum_Coupled_Fraction' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'PhotonMomentum_fUV' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'PhotonMomentum_fOPT' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'GasReturnFraction' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'GasReturnEnergy' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'TimeBetOnTheFlyFoF' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'he' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'SeedBlackHoleMass' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'SeedBlackHoleMassSigma' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'MinFoFMassForNewSeed' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 't' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'massDMpart' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BlackHoleAccretionFactor' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BlackHoleEddingtonFactor' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BlackHoleNgbFactor' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BlackHoleMaxAccretionRadius' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BlackHoleRadiativeEfficiency' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BlackHoleFeedbackFactor' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BH_FluxMomentumFactor' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BAL_f_accretion' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'BAL_v_outflow' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'SeedBlackHoleMinRedshift' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'SeedBlackHoleMassSigma' ignored ! +WARNING from file /home/desika.narayanan/gizmo_runs/simba/m100n1024_dm/m100n1024.param: Tag 'GrackleDataFile' ignored ! + + +found 11 times in output-list. + +Hubble (internal units) = 0.1 +G (internal units) = 43007.1 +UnitMass_in_g = 1.989e+43 +UnitTime_in_s = 3.08568e+16 +UnitVelocity_in_cm_per_s = 100000 +UnitDensity_in_cgs = 6.76991e-22 +UnitEnergy_in_cgs = 1.989e+53 + +initialize Ewald correction... + +reading Ewald tables from file `ewald_spc_table_64_dbl.dat' +initialization of periodic boundaries finished. + +Allocated 1377.28 MByte for particle storage. + +Allocated 1556.48 MByte for storage of SPH data. + + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.0' on task=0 (contains 67108864 particles.) +distributing this file to tasks 0-36 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.1' on task=37 (contains 67108864 particles.) +distributing this file to tasks 37-74 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.2' on task=75 (contains 67108864 particles.) +distributing this file to tasks 75-111 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.3' on task=112 (contains 67108864 particles.) +distributing this file to tasks 112-149 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.4' on task=150 (contains 67108864 particles.) +distributing this file to tasks 150-186 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.5' on task=187 (contains 67108864 particles.) +distributing this file to tasks 187-224 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.6' on task=225 (contains 67108864 particles.) +distributing this file to tasks 225-261 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.7' on task=262 (contains 67108864 particles.) +distributing this file to tasks 262-299 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.8' on task=300 (contains 67108864 particles.) +distributing this file to tasks 300-336 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.9' on task=337 (contains 67108864 particles.) +distributing this file to tasks 337-374 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.10' on task=375 (contains 67108864 particles.) +distributing this file to tasks 375-411 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.11' on task=412 (contains 67108864 particles.) +distributing this file to tasks 412-449 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)... +reading block 2 (ParticleIDs)... +reading block 3 (Masses)... + +reading file `/ufrc/narayanan/desika.narayanan/gizmo_runs/simba/m100n1024_dm/ICs/ics_m100n1024.12' on task=450 (contains 67108864 particles.) +distributing this file to tasks 450-486 +Type 0 (gas): 0 (tot= 0000000000) masstab=0 +Type 1 (halo): 67108864 (tot= 1073741824) masstab=0.00775381 +Type 2 (disk): 0 (tot= 0000000000) masstab=0 +Type 3 (bulge): 0 (tot= 0000000000) masstab=0 +Type 4 (stars): 0 (tot= 0000000000) masstab=0 +Type 5 (bndry): 0 (tot= 0000000000) masstab=0 + +reading block 0 (Coordinates)... +reading block 1 (Velocities)...